PROJECT NAME
GOLD Project ID
Gp0000148  
Project Name
Geobacter uraniireducens Rf4  
Other Names
  
Legacy ER Project ID
10125  
Legacy GOLD ID
Gi01251, Gc00560  
NCBI BioProject Name Geobacter uraniireducens Rf4
NCBI BioProject ID 15768
NCBI BioProject Accession
PRJNA15768  
NCBI Locus Tag
Gura  
NCBI BioSample Accession
SAMN02598352  
PI Shelobolina, Evgenya
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Environmental
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Iron- and uranium-reducing bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Geobacter uraniumreducens RF4
Analysis Projects Geobacter uraniireducens Rf4
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
54  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000148
Organism Name
Geobacter uraniireducens Rf4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Geobacter  
Genus Synonyms
  
Species
Geobacter uraniireducens  
Subspecies
  
Species Synonyms
  
Strain
Rf4  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-1134  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13330  
Exemplar Name
Geobacter uraniireducens  
Taxon DOI
10.1601/tx.13330  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 351605
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfuromonadales  
NCBI Family
Geobacteraceae  
NCBI Genus
Geobacter  
NCBI Species
Geobacter uraniireducens  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Bioremediation  
Ecosystem Type
Metal  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 822626
Genbank 16S ID EF527427
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Sediment
Soil
Metabolisms Iron reducer
Uranium reducer
Phenotypes
  
Energy Sources Chemolithotroph

 

 

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