PROJECT NAME
GOLD Project ID
Gp0000146  
Project Name
Thermotoga petrophila RKU-1  
Other Names
  
Legacy ER Project ID
10123  
Legacy GOLD ID
Gi01043, Gc00562  
NCBI BioProject Name Thermotoga petrophila RKU-1
NCBI BioProject ID 17089
NCBI BioProject Accession
PRJNA17089  
NCBI Locus Tag
Tpet  
NCBI BioSample Accession
SAMN02598377  
PI Noll, Kenneth M.
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Evolution
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Anaerobic thermophile isolated from oil reservoir  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Wikipedia
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 106(14):5865-70 On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Thermotogales
Analysis Projects Thermotoga petrophila RKU-1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000146
Organism Name
Thermotoga petrophila RKU-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
THERMOTOGAE  
Genus
Thermotoga  
Genus Synonyms
  
Species
Thermotoga petrophila  
Subspecies
  
Species Synonyms
  
Strain
RKU-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-488  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.466  
Exemplar Name
Thermotoga petrophila  
Taxon DOI
10.1601/tx.466  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 390874
NCBI Kingdom
  
NCBI Phylum
Thermotogae  
NCBI Class
Thermotogae  
NCBI Order
Thermotogales  
NCBI Family
Thermotogaceae  
NCBI Genus
Thermotoga  
NCBI Species
Thermotoga petrophila  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Industrial wastewater  
Ecosystem Subtype
Petrochemical  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 163898
Genbank 16S ID AB027016
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Hyperthermophile  
Temperature Optimum
80  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Oil fields
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources Heterotroph

 

 

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