PROJECT INFORMATION
GOLD Project ID
Gp0000145  
Project Name
Clavibacter michiganensis michiganensis NCPPB 382  
Other Names
  
Legacy ER Project ID
10122  
Legacy GOLD ID
Gi00154, Gc00563  
NCBI BioProject Name Clavibacter michiganensis subsp. michiganensis NCPPB 382
NCBI BioProject ID 19643
NCBI BioProject Accession PRJNA19643
NCBI Locus Tag
CMM  
NCBI BioSample Accession SAMEA3138263
PI Puhler A
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Plant Pathogen
Agricultural
Sequencing Center Bielefeld University (Germany)
Collaborating Institute
  
Funding Agency Federal Ministry of Education and Research (BMBF) (Germany)
Project Description
Phytopathogen that causes bacterial wilt and canker of tomato  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications Journal of bacteriology 190(6):2138-49 The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity.
Other Publications
  
PROJECT COMPOSITION
Study Clavibacter michiganensis michiganensis NCPPB 382
Analysis Projects Clavibacter michiganensis michiganensis NCPPB 382
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
1 Kb, 2-3 Kb, 8 Kb  
Number Of Reads
48072  
Read Size
  
Vector
pSMART  
GC Percent
72  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0000145
Organism Name
Clavibacter michiganensis michiganensis NCPPB 382  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Clavibacter  
Genus Synonyms
Corynebacterium  
Species
Clavibacter michiganensis  
Subspecies
michiganensis  
Species Synonyms
  
Strain
NCPPB 382  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NCPPB 382  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 443906
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Microbacteriaceae  
NCBI Genus
Clavibacter  
NCBI Species
Clavibacter michiganensis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 7256
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25-28C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases Tuber rot
Ring rot
Wilting disease
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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