PROJECT NAME
GOLD Project ID
Gp0000137  
Project Name
Sphingomonas wittichii RW1  
Other Names
  
Legacy ER Project ID
10114  
Legacy GOLD ID
Gi01358, Gc00571  
NCBI BioProject Name Sphingomonas wittichii RW1
NCBI BioProject ID 17343
NCBI BioProject Accession
PRJNA17343  
NCBI Locus Tag
Swit  
NCBI BioSample Accession
SAMN02598383  
PI Halden, Rolf U.
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Jon Bertsch on 2014-04-08 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Dioxin-mineralizing
Environmental
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Dibenzo-p-dioxin and dibenzofuran degrading bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Wikipedia
Database
  
Genome Publications Journal of bacteriology 192(22):6101-2 Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Sphingomonas wittichii RW1
Analysis Projects Sphingomonas wittichii RW1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0000137
Organism Name
Sphingomonas wittichii RW1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Sphingomonas  
Genus Synonyms
  
Species
Sphingomonas wittichii  
Subspecies
  
Species Synonyms
  
Strain
RW1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 6014  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1201  
Exemplar Name
Sphingomonas wittichii  
Taxon DOI
10.1601/tx.1201  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 392499
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Sphingomonas  
NCBI Species
Sphingomonas wittichii  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lotic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 144023
Genbank 16S ID AB021492
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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