PROJECT NAME
GOLD Project ID
Gp0000134  
Project Name
Methanobrevibacter smithii PS, ATCC 35061  
Other Names
  
Legacy ER Project ID
10111  
Legacy GOLD ID
Gi01898, Gc00574  
NCBI BioProject Name Methanobrevibacter smithii ATCC 35061
NCBI BioProject ID 18653
NCBI BioProject Accession
PRJNA18653  
NCBI Locus Tag
Msm  
NCBI BioSample Accession
SAMN02604313  
PI Human Gut Community Users
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Human Gut Microbiome Initiative (HGMI)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Sewage digester isolate  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
ArchaeaWeb
Taxonomy
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Methanobrevibacter smithii PS, ATCC 35061
Analysis Projects Methanobrevibacter smithii PS, ATCC 35061
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
5 kb, 40 kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
31  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000134
Organism Name
Methanobrevibacter smithii PS, ATCC 35061  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOBACTERIA  
Genus
Methanobrevibacter  
Genus Synonyms
  
Species
Methanobrevibacter smithii  
Subspecies
  
Species Synonyms
  
Strain
PS, ATCC 35061  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 35061  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.125  
Exemplar Name
Methanobrevibacter smithii  
Taxon DOI
10.1601/tx.125  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 420247
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanobacteria  
NCBI Order
Methanobacteriales  
NCBI Family
Methanobacteriaceae  
NCBI Genus
Methanobrevibacter  
NCBI Species
Methanobrevibacter smithii  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 157022
Genbank 16S ID AY196669
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37 - 40  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Diseases None
Known Habitats Host
Human intestinal microflora
Soil
Metabolisms Methanogen
Phenotypes Symbiotic
Energy Sources Lithotroph

 

 

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