PROJECT INFORMATION
GOLD Project ID
Gp0000103  
Project Name
Oryza sativa ssp. japonica  
Other Names
  
Legacy ER Project ID
10082  
Legacy GOLD ID
Gi00421, Gc00603  
NCBI BioProject Name Oryza sativa (japonica cultivar-group)
NCBI BioProject ID 13141
NCBI BioProject Accession PRJNA13141
NCBI Locus Tag
LOC  
NCBI BioSample Accession
PI Sasaki T
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Tatiparthi Reddy on 2013-01-14
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center CEA Genoscope (France)
Collaborating Institute ANRT (France)
Funding Agency
  
Project Description
International Rice Genome Sequencing Project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Nature The map-based sequence of the rice genome.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Oryza sativa ssp. japonica
Organism Oryza sativa ssp. japonica
Analysis Projects Oryza sativa ssp. japonica
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
43  
Chromosome Count
12  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000697
Organism Name
Oryza sativa ssp. japonica  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-STREPTOPHYTA  
Genus
Oryza  
Genus Synonyms
  
Species
Oryza sativa  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 39947
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Streptophyta  
NCBI Class
Liliopsida  
NCBI Order
Poales  
NCBI Family
Poaceae  
NCBI Genus
Oryza  
NCBI Species
Oryza sativa  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?