PROJECT INFORMATION
GOLD Project ID
Gp0000086  
Project Name
Nitratiruptor sp. SB155-2  
Other Names
  
Legacy ER Project ID
10066  
Legacy GOLD ID
Gc00619  
NCBI BioProject Name Nitratiruptor sp. SB155-2
NCBI BioProject ID 18963
NCBI BioProject Accession PRJDA18963
NCBI Locus Tag
NIS  
NCBI BioSample Accession SAMD00060914
PI Nakagawa S
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Alejandro Rodriguez Mojica on 2018-07-18
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Japan Agency for Marine-Earth Science and Technology (Japan)
Collaborating Institute
  
Funding Agency Ministry of Education, Culture, Sports and Technology (MEXT), Japan (Japan)
Project Description
Sequenced as an effort to address the mechanistic reasons for their prevalence in deep-sea vents and whether deep-sea vent chemolithoautotrophs could be an evolutionary source of human/animal pathogens  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Isolation
Entrez
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America Deep-sea vent epsilon-proteobacterial genomes provide insights into emergence of pathogens.
Other Publications
  
PROJECT COMPOSITION
Study Nitratiruptor sp. SB155-2
Analysis Projects Nitratiruptor sp. SB155-2
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
1.5?2.2 kb, 3?5 kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000086
Organism Name
Nitratiruptor sp. SB155-2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Nitratiruptor  
Genus Synonyms
  
Species
Nitratiruptor sp. SB155-2  
Subspecies
  
Species Synonyms
  
Strain
SB155-2  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 387092
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
  
NCBI Family
  
NCBI Genus
Nitratiruptor  
NCBI Species
Nitratiruptor sp. SB155-2  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Thermophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Hydrothermal vent
Deep sea
Metabolisms
  
Phenotypes
  
Energy Sources Chemolithoautotroph

 

 

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