Studies
|
52,459 |
|
Biosamples
|
170,240 |
|
Sequencing Projects
|
472,597 |
|
Analysis Projects
|
359,686 |
| Organisms | 460,462 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0000071
|
|
Project Name
|
Parvibaculum lavamentivorans DS-1
|
|
Other Names
|
|
|
Legacy ER Project ID
|
10054
|
|
Legacy GOLD ID
|
Gi01347, Gc00631
|
| NCBI BioProject Name | Parvibaculum lavamentivorans DS-1 |
|
NCBI BioProject Accession
|
PRJNA17639 |
|
NCBI Locus Tag
|
Plav
|
|
NCBI BioSample Accession
|
SAMN00623055 |
| PI | not listed |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
JGI automated process
on 2014-03-26 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Biotechnological Bioremediation |
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Surfactant degrading bacterium
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
| JGI Portal Download | Raw Sequence Data |
|
Genome Publications
|
Standards in genomic sciences
5(3):298-310
Complete genome sequence of Parvibaculum lavamentivorans type strain (DS-1(T)).
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
Applied and environmental microbiology
69(2):938-44
Desulfonation and degradation of the disulfodiphenylethercarboxylates from linear alkyldiphenyletherdisulfonate surfactants.
J. Appl. Microbiol. 96(3):630-40 Parvibaculum lavamentivorans converts linear alkylbenzenesulphonate surfactant to sulphophenylcarboxylates, alpha,beta-unsaturated sulphophenylcarboxylates and sulphophenyldicarboxylates, which are degraded in communities. Show more publications...
Archives of microbiology
183(6):369-77
Omega-oxygenation of the alkyl sidechain of linear alkylbenzenesulfonate (LAS) surfactant in Parvibaculum lavamentivorans(T).
Applied and environmental microbiology 66(5):1911-6 An alpha-proteobacterium converts linear alkylbenzenesulfonate surfactants into sulfophenylcarboxylates and linear alkyldiphenyletherdisulfonate surfactants into sulfodiphenylethercarboxylates. Applied and environmental microbiology 73(15):4725-32 Parvibaculum lavamentivorans DS-1T degrades centrally substituted congeners of commercial linear alkylbenzenesulfonate to sulfophenyl carboxylates and sulfophenyl dicarboxylates. Applied and environmental microbiology Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria. International Journal of Systematic and Evolutionary Microbiology 54(Pt 5):1489-97 Parvibaculum lavamentivorans gen. nov., sp. nov., a novel heterotroph that initiates catabolism of linear alkylbenzenesulfonate. |
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
LAS biofilm Proposal # 0183-051117 |
| Organism |
Parvibaculum lavamentivorans DS-1 |
| Analysis Projects |
Parvibaculum lavamentivorans DS-1 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
62
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000071 |
| Organism Name |
Parvibaculum lavamentivorans DS-1
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
Parvibaculum
|
| Genus Synonyms |
|
| Species |
Parvibaculum lavamentivorans
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
DS-1
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 13023
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.8768
|
| Exemplar Name |
Parvibaculum lavamentivorans
|
| Taxon DOI |
10.1601/tx.8768
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
402881 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Hyphomicrobiales
|
| NCBI Family |
Parvibaculaceae
|
| NCBI Genus |
Parvibaculum
|
| NCBI Species |
Parvibaculum lavamentivorans
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
|
| Ecosystem Category |
Wastewater
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
268703 |
| Genbank 16S ID |
AY387398 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
0.2 um
|
| Cell Length |
0.8 um
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Host Sludge |
| Metabolisms |
Surfactant-degrading |
| Phenotypes |
|
| Energy Sources |
Heterotroph |
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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