PROJECT INFORMATION
GOLD Project ID
Gp0000062  
Project Name
Escherichia coli sv. O9 HS  
Other Names
  
Legacy ER Project ID
10045  
Legacy GOLD ID
Gi01140, Gc00640  
NCBI BioProject Name Escherichia coli HS
NCBI BioProject ID 13959
NCBI BioProject Accession PRJNA13959
NCBI Locus Tag
EcHS  
NCBI BioSample Accession SAMN02604037
PI David A Rasko
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jyothi Mallajosyula on 2014-10-10
Project Comments
  
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency National Institute of Allergy and Infectious Diseases (USA)
Project Description
Non-Pathogen, Commensal strain, ECOR group: A  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 190(20):6881-93 The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX7658362  (Link to NCBI )
Experiment Title WGS of Escherichia coli HS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100105221_CAACGTAC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX7658363  (Link to NCBI )
Experiment Title WGS of Escherichia coli HS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100105221_CAAGCTTG
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX7658386  (Link to NCBI )
Experiment Title WGS of Escherichia coli HS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100105221_GTACAGCT
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX7658353  (Link to NCBI )
Experiment Title WGS of Escherichia coli HS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100105221_AGGTAGGT
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX7658408  (Link to NCBI )
Experiment Title WGS of Escherichia coli HS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100117483
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX7658393  (Link to NCBI )
Experiment Title WGS of Escherichia coli HS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100105221_TAGCTACG
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX7658350  (Link to NCBI )
Experiment Title WGS of Escherichia coli HS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100105221_AGCTAGCT
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX7658406  (Link to NCBI )
Experiment Title WGS of Escherichia coli HS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100105221_TGGTGTAC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX7658367  (Link to NCBI )
Experiment Title WGS of Escherichia coli HS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100105221_CAGTCAGT
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX7658334  (Link to NCBI )
Experiment Title WGS of Escherichia coli HS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100105221_GAACTGCT
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX7658335  (Link to NCBI )
Experiment Title WGS of Escherichia coli HS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100105221_GAAGCTTC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Escherichia coli O9 HS
Organism Escherichia coli sv. O9 HS
Analysis Projects Escherichia coli sv. O9 HS
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
4-5 kb, 10-12 kb  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000062
Organism Name
Escherichia coli sv. O9 HS  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Escherichia  
Genus Synonyms
  
Species
Escherichia coli  
Subspecies
  
Species Synonyms
  
Strain
HS  
Strain Synonyms
  
Serovar/Cultivar
O9  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 331112
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Escherichia  
NCBI Species
Escherichia coli  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
Commensal  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases None
Known Habitats Human intestinal microflora
Host
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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