PROJECT NAME
GOLD Project ID
Gp0000056  
Project Name
Shewanella sediminis HAW-EB3  
Other Names
  
Legacy ER Project ID
10039  
Legacy GOLD ID
Gi01356, Gc00646  
NCBI BioProject Name Shewanella sediminis HAW-EB3
NCBI BioProject ID 18789
NCBI BioProject Accession
PRJNA18789  
NCBI Locus Tag
Ssed  
NCBI BioSample Accession
SAMN02598412  
PI Jian-Shen Zhao
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Degrades RDX
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX)-degrading bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Isolation
Entrez
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies 4 Shewanellas
Analysis Projects Shewanella sediminis HAW-EB3
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000056
Organism Name
Shewanella sediminis HAW-EB3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Shewanella  
Genus Synonyms
  
Species
Shewanella sediminis  
Subspecies
  
Species Synonyms
  
Strain
HAW-EB3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NCIMB 14036  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9524  
Exemplar Name
Shewanella sediminis  
Taxon DOI
10.1601/tx.9524  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 425104
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Shewanellaceae  
NCBI Genus
Shewanella  
NCBI Species
Shewanella sediminis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Sediment  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 620969
Genbank 16S ID AY579750
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Psychrophile  
Temperature Optimum
10C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Marine
Sediment
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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