Studies
|
56,018 |
|
Biosamples
|
183,993 |
|
Sequencing Projects
|
508,012 |
|
Analysis Projects
|
381,516 |
| Organisms | 480,462 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0000051
|
|
Project Name
|
Pseudothermotoga lettingae TMO
|
|
Other Names
|
Thermotoga lettingae TMO
|
|
Legacy ER Project ID
|
10036
|
|
Legacy GOLD ID
|
Gi01044, Gc00649
|
| NCBI BioProject Name | Thermotoga lettingae TMO |
|
NCBI BioProject Accession
|
PRJNA15644 |
|
NCBI Locus Tag
|
Tlet
|
|
NCBI BioSample Accession
|
SAMN02598331 |
|
Source Sample ID
|
|
| PI | Noll, Kenneth M. |
| Added By | Nikos Kyrpides on 2007-11-27 |
| Last Modified By | Supratim Mukherjee on 2017-03-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Evolution Comparative analysis Biotechnological |
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Thermophilic, methanol-degrading organism
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
| JGI Portal Download | Raw Sequence Data |
|
Genome Publications
|
Proceedings of the National Academy of Sciences of the United States of America: 106(14):5865-70 On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales. PubMed: 19307556 DOI: 10.1073/pnas.0901260106 |
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Thermotoga lettingae TMO |
| Organism |
Pseudothermotoga lettingae TMO |
| Analysis Projects |
Pseudothermotoga lettingae TMO |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
39
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000051 |
| Organism Name |
Pseudothermotoga lettingae TMO
|
| Other names (alias, synonyms, short names, common names) |
Thermotoga lettingae TMO
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
THERMOTOGAE
|
| Genus |
Pseudothermotoga
|
| Genus Synonyms |
Thermotoga
|
| Species |
Pseudothermotoga lettingae
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
TMO
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 14385
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.463
|
| Exemplar Name |
Pseudothermotoga lettingae
|
| Taxon DOI |
10.1601/tx.25053
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
416591 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Thermotogae
|
| NCBI Class |
Thermotogae
|
| NCBI Order |
Thermotogales
|
| NCBI Family |
Thermotogaceae
|
| NCBI Genus |
Pseudothermotoga
|
| NCBI Species |
Pseudothermotoga lettingae
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
|
| Ecosystem Category |
Wastewater
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
304122 |
| Genbank 16S ID |
AF355615 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Thermophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles |
| Diseases |
None |
| Known Habitats |
Fresh water |
| Metabolisms |
Methanol degrading |
| Phenotypes |
|
| Energy Sources |
Heterotroph |
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