PROJECT INFORMATION | |
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GOLD Project ID
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Gp0000051
|
Project Name
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Pseudothermotoga lettingae TMO
|
Other Names
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Thermotoga lettingae TMO
|
Legacy ER Project ID
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10036
|
Legacy GOLD ID
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Gi01044, Gc00649
|
NCBI BioProject Name | Thermotoga lettingae TMO |
NCBI BioProject Accession
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PRJNA15644 |
NCBI Locus Tag
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Tlet
|
NCBI BioSample Accession
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SAMN02598331 |
Source Sample ID
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|
PI | Noll, Kenneth M. |
Added By | Nikos Kyrpides on 2007-11-27 |
Last Modified By | Supratim Mukherjee on 2017-03-08 |
Project Comments |
|
Project Status
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Complete and Published
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Project Relevance
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Evolution Comparative analysis Biotechnological |
Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
|
Collaborating Institute
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|
Funding Agency
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U.S. Department of Energy (DOE)
(USA)
|
Project Description
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Thermophilic, methanol-degrading organism
|
Is JGI Project |
Yes
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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JGI Portal Download | Raw Sequence Data |
Genome Publications
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Proceedings of the National Academy of Sciences of the United States of America: 106(14):5865-70 On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales. PubMed: 19307556 DOI: 10.1073/pnas.0901260106 |
Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Thermotoga lettingae TMO |
Organism |
Pseudothermotoga lettingae TMO |
Analysis Projects |
Pseudothermotoga lettingae TMO |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Level 6: Finished |
Contamination Screening Input
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|
DNA Amplification Method
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|
Single Cell Lysis Protocol
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|
Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Sanger |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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|
GC Percent |
39
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0000051 |
Organism Name |
Pseudothermotoga lettingae TMO
|
Other names (alias, synonyms, short names, common names) |
Thermotoga lettingae TMO
|
Organism Domain |
BACTERIAL
|
Phylogeny |
THERMOTOGAE
|
Genus |
Pseudothermotoga
|
Genus Synonyms |
Thermotoga
|
Species |
Pseudothermotoga lettingae
|
Subspecies |
|
Species Synonyms |
|
Strain |
TMO
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
DSM 14385
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.463
|
Exemplar Name |
Pseudothermotoga lettingae
|
Taxon DOI |
10.1601/tx.25053
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
416591 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Thermotogae
|
NCBI Class |
Thermotogae
|
NCBI Order |
Thermotogales
|
NCBI Family |
Thermotogaceae
|
NCBI Genus |
Pseudothermotoga
|
NCBI Species |
Pseudothermotoga lettingae
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Engineered
|
Ecosystem Category |
Wastewater
|
Ecosystem Type |
Unclassified
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
304122 |
Genbank 16S ID |
AF355615 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
|
Cell Shape |
Rod-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Thermophile
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
Singles |
Diseases |
None |
Known Habitats |
Fresh water |
Metabolisms |
Methanol degrading |
Phenotypes |
|
Energy Sources |
Heterotroph |
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