PROJECT NAME
GOLD Project ID
Gp0000041  
Project Name
Dinoroseobacter shibae DFL-12, DSM 16493  
Other Names
  
Legacy ER Project ID
10026  
Legacy GOLD ID
Gi01335, Gc00659  
NCBI BioProject Name Dinoroseobacter shibae DFL 12
NCBI BioProject ID 17417
NCBI BioProject Accession
PRJNA17417  
NCBI Locus Tag
Dshi  
NCBI BioSample Accession
SAMN02598387  
PI Wagner-Dobler, Irene
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Comparative analysis
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
An aerobic anoxygenic phototrophic bacterium isolated from a marine dinoflagellate  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Isolation
Entrez
Database
  
Genome Publications The ISME journal 4(1):61-77 The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Dinoroseobacter shibae
Analysis Projects Dinoroseobacter shibae DFL-12, DSM 16493
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
66  
Chromosome Count
1  
Plasmid Count
5  
ORGANISM NAME
GOLD Organism ID Go0040495
Organism Name
Dinoroseobacter shibae DFL-12, DSM 16493  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Dinoroseobacter  
Genus Synonyms
  
Species
Dinoroseobacter shibae  
Subspecies
  
Species Synonyms
  
Strain
DFL 12  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 16493  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9431  
Exemplar Name
Dinoroseobacter shibae  
Taxon DOI
10.1601/tx.9431  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 398580
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Dinoroseobacter  
NCBI Species
Dinoroseobacter shibae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Protists  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 387730
Genbank 16S ID AJ534211
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
33  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Metabolisms
  
Phenotypes Anoxygenic
Energy Sources Phototroph

 

 

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