PROJECT INFORMATION
GOLD Project ID
Gp0096767  
Project Name
Candidatus Arthromitus sp. SFB-mouse-NL  
Other Names
  
Legacy ER Project ID
74767  
Legacy GOLD ID
Gi0074767, Gc0074767  
NCBI BioProject Name Candidatus Arthromitus sp. SFB-mouse-NL
NCBI BioProject ID 252553
NCBI BioProject Accession PRJNA252553
NCBI Locus Tag
SFBMNL  
NCBI BioSample Accession
PI
Added By JGI automated process on 2014-06-26
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center National Institute for Agricultural Research (INRA) (France)
Collaborating Institute
  
Funding Agency
  
Project Description
Candidatus Arthromitus SFB-mouse-NL is a commensal bacterium with the capacity to orchestrate the coordinated maturation of T-cell responses in germ-free mice, thus mimicking the effect of the conventional mouse microbiota. Here we report the genome sequence of this bacterium, which sets it apart from earlier sequenced mouse SFB isolates.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Genome sequence of Candidatus Arthromitus sp. SFB-mouse-NL, a commensal bacterium with a key role in the postnatal maturation of gut immune functions
Organism Candidatus Arthromitus sp. SFB-mouse-NL
Analysis Projects Candidatus Arthromitus sp. SFB-mouse-NL
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
28  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0096767
Organism Name
Candidatus Arthromitus sp. SFB-mouse-NL  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
  
Genus Synonyms
  
Species
Candidatus Arthromitus sp. SFB-mouse-NL  
Subspecies
  
Species Synonyms
  
Strain
SFB-mouse-NL  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1508644
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Candidatus Arthromitus  
NCBI Species
Candidatus Arthromitus sp. SFB-mouse-NL  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
  
Sporulation
Sporulating  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic extracellular  
Symbiotic Relationship
Commensal  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Insect
Mouse
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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