Studies
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38,587 |
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Biosamples
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64,419 |
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Sequencing Projects
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283,713 |
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Analysis Projects
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229,040 |
| Organisms | 362,051 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0096767
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Project Name
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Candidatus Arthromitus sp. SFB-mouse-NL
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Other Names
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Legacy ER Project ID
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74767
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Legacy GOLD ID
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Gi0074767, Gc0074767
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| NCBI BioProject Name | Candidatus Arthromitus sp. SFB-mouse-NL |
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NCBI BioProject ID
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252553 |
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NCBI BioProject Accession
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PRJNA252553 |
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NCBI Locus Tag
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SFBMNL
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NCBI BioSample Accession
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| PI | |
| Added By |
JGI automated process
on 2014-06-26 |
| Last Modified By |
JGI automated process
on 2014-08-18 |
| Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Medical |
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Sequencing Center
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National Institute for Agricultural Research (INRA)
(France)
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Collaborating Institute
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Funding Agency
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Project Description
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Candidatus Arthromitus SFB-mouse-NL is a commensal bacterium with the capacity to orchestrate the coordinated maturation of T-cell responses in germ-free mice, thus mimicking the effect of the conventional mouse microbiota. Here we report the genome sequence of this bacterium, which sets it apart from earlier sequenced mouse SFB isolates.
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| Is JGI Project |
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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Genome Publications
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Other Publications
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| PROJECT COMPOSITION | |
| Study |
Genome sequence of Candidatus Arthromitus sp. SFB-mouse-NL, a commensal bacterium with a key role in the postnatal maturation of gut immune functions |
| Organism |
Candidatus Arthromitus sp. SFB-mouse-NL |
| Analysis Projects |
Candidatus Arthromitus sp. SFB-mouse-NL |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
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Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Sanger Illumina |
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
28
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| Chromosome Count |
1
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| Plasmid Count |
0
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0096767 |
| Organism Name |
Candidatus Arthromitus sp. SFB-mouse-NL
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
FIRMICUTES
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| Genus |
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| Genus Synonyms |
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| Species |
Candidatus Arthromitus sp. SFB-mouse-NL
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| Subspecies |
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| Species Synonyms |
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| Strain |
SFB-mouse-NL
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| Strain Synonyms |
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| Serovar-Biovar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1508644 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Firmicutes
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| NCBI Class |
Clostridia
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| NCBI Order |
Clostridiales
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| NCBI Family |
Clostridiaceae
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| NCBI Genus |
Candidatus Arthromitus
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| NCBI Species |
Candidatus Arthromitus sp. SFB-mouse-NL
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
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| Cell Shape |
Filament-shaped
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| Motility |
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| Sporulation |
Sporulating
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| Temperature Range |
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| Temperature Optimum |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships | Symbiotic |
| Symbiotic Physical Interaction |
Endosymbiotic extracellular
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| Symbiotic Relationship |
Commensal
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Insect Mouse |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| CYANOBACTERIA METADATA | |
| Filaments |
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| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
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| Branching |
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| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
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| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
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| Complementary chromatic adaptation (CCA) |
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| Medium Types |
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