PROJECT INFORMATION
GOLD Project ID
Gp0092885  
Project Name
Pseudomonas aeruginosa RB RB  
Other Names
  
Legacy ER Project ID
73002  
Legacy GOLD ID
Gi0073002  
NCBI BioProject Name Pseudomonas aeruginosa RB
NCBI BioProject ID 244623
NCBI BioProject Accession PRJDB1483
NCBI Locus Tag
RBRAMI  
NCBI BioSample Accession SAMD00036777
PI
Added By JGI automated process on 2014-04-25
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Osaka University (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Quantum dots (QDs) are 1–10 nm semiconductor nanoparticles that possess size-dependent luminescence. One of the QDs, cadmium selenide (CdSe) attracts particular attention because it is useful for light emitting diodes, solar cells, and biological imaging. However, conventional chemical synthesis of CdSe involves highly toxic solvents and high temperatures. Additionally, it is not easy to obtain nanoparticles of the desired size because of their high growth rate. To overcome the shortcomings of the chemical synthesis method, microbial synthesis of CdSe at ambient temperature and pressure without toxic solvents has attracted much attention recently as an environmentally friendly procedure. Microbial manufacturing will increase controllability of the formation and growth of the QDs. To date, only a few microbes have been applied to CdSe synthesis. It is therefore worthwhile to seek novel, effective CdSe-synthesizing microbes, especially for use in the one-vessel process. However, no report in the relevant literature to date describes a study conducted to screen microbes suitable for one-vessel CdSe synthesis. Such bacteria might be capable of being both cadmium-resistant and of reducing selenite to selenide. The bacterium with both cadmium-resistant and selenite-reducing capabilities as a promising microbial catalyst for producing CdSe nanoparticles using an economical and environmentally friendly one-vessel process was enriched and isolated from a sample.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Pseudomonas aeruginosa RB
Organism Pseudomonas aeruginosa RB RB
Analysis Projects Pseudomonas aeruginosa RB RB
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0092885
Organism Name
Pseudomonas aeruginosa RB RB  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas aeruginosa  
Subspecies
  
Species Synonyms
  
Strain
RB  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1407649
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas aeruginosa  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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