PROJECT INFORMATION
GOLD Project ID
Gp0088929  
Project Name
Thermus caliditerrae YIM 77777  
Other Names
  
Legacy ER Project ID
71310  
Legacy GOLD ID
Gi0071310  
NCBI BioProject Name Thermus caliditerrae strain:YIM 77777
NCBI BioProject ID 245592
NCBI BioProject Accession PRJNA245592
NCBI Locus Tag
EI72  
NCBI BioSample Accession SAMN02745159
PI Brian Hedlund
Added By JGI automated process on 2014-03-04
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing Genomes of Environmentally Important Thermophiles in Great Basin hot springs: Thermocrinis ruber, three members of the genus Thermus, and a novel Chloroflexi  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Genome announcements High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2065424  (Link to NCBI )
Experiment Title Thermus caliditerrae YIM 77777
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name WUOT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2065425  (Link to NCBI )
Experiment Title Thermus caliditerrae YIM 77777
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name WUOT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2065422  (Link to NCBI )
Experiment Title Thermus caliditerrae YIM 77777
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name WUOT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2065423  (Link to NCBI )
Experiment Title Thermus caliditerrae YIM 77777
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name WUOT
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Sequencing Genomes of Environmentally Important Thermophiles in Great Basin hot springs: Thermocrinis ruber, three members of the genus Thermus, and a novel Chloroflexi
Organism Thermus caliditerrae YIM 77777
Analysis Projects Thermus caliditerrae YIM 77777
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0088929
Organism Name
Thermus caliditerrae YIM 77777  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
DEINOCOCCUS-THERMUS  
Genus
Thermus  
Genus Synonyms
  
Species
Thermus sp. YIM 77777  
Subspecies
  
Species Synonyms
  
Strain
YIM 77777  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
YIM 77777  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1330700
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Deinococcus-Thermus  
NCBI Class
Deinococci  
NCBI Order
Thermales  
NCBI Family
Thermaceae  
NCBI Genus
Thermus  
NCBI Species
Thermus caliditerrae  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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