PROJECT NAME
GOLD Project ID
Gp0008384  
Project Name
Candidatus Nitrosopumilus salaria BD31  
Other Names
  
Legacy ER Project ID
17506  
Legacy GOLD ID
Gi07279  
NCBI BioProject Name marine archaeal group 1 strain BD31
NCBI BioProject ID 50075
NCBI BioProject Accession PRJNA50075
NCBI Locus Tag
BD31  
NCBI BioSample Accession SAMN00016669
PI
Added By Ionna Pagani on 2010-07-07
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Marine Microbial Initiative (MMI)
Environmental
Ecological
Sequencing Center Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
marine archaeal group 1 strain BD31 genome sequencing  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information Moore Foundation
Database
  
Genome Publications Journal of bacteriology 194(8):2121-2 Genome sequence of Candidatus Nitrosopumilus salaria BD31, an ammonia-oxidizing archaeon from the San Francisco Bay estuary.
Other Publications
  
PROJECT COMPOSITION
Study Marine archaeal group 1 BD31
Analysis Projects Candidatus Nitrosopumilus salaria BD31
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
34  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0008384
Organism Name
Candidatus Nitrosopumilus salaria BD31  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
THAUMARCHAEOTA  
Genus
Candidatus Nitrosopumilus  
Genus Synonyms
  
Species
Candidatus Nitrosopumilus salaria  
Subspecies
  
Species Synonyms
  
Strain
BD31  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 859350
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Thaumarchaeota  
NCBI Class
  
NCBI Order
Nitrosopumilales  
NCBI Family
Nitrosopumilaceae  
NCBI Genus
Nitrosopumilus  
NCBI Species
Candidatus Nitrosopumilus salaria  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Estuary  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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