PROJECT INFORMATION
GOLD Project ID
Gp0007912  
Project Name
Escherichia coli DEC1E  
Other Names
  
Legacy ER Project ID
17586  
Legacy GOLD ID
Gi07399  
NCBI BioProject Name Escherichia coli DEC1E
NCBI BioProject ID 50911
NCBI BioProject Accession PRJNA50911
NCBI Locus Tag
ECDEC1E  
NCBI BioSample Accession SAMN00191014
PI
Added By Ionna Pagani on 2010-07-29
Last Modified By JGI automated process on 2014-10-31
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Dairy industry
Sequencing Center University of Maryland (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Escherichia coli DEC1E genome sequencing project  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(11):3026-7 Draft genome sequences of the diarrheagenic Escherichia coli collection.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX038483
Experiment Title 454 sequencing of ECDEC1E
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 4LI100006921
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
PROJECT COMPOSITION
Study Escherichia coli (diarrheagenic strains)
Organism Escherichia coli DEC1E
Analysis Projects Escherichia coli DEC1E
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007912
Organism Name
Escherichia coli DEC1E  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Escherichia  
Genus Synonyms
  
Species
Escherichia coli  
Subspecies
  
Species Synonyms
  
Strain
DEC1E  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 868137
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Escherichia  
NCBI Species
Escherichia coli  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
Commensal  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases None
Known Habitats Human intestinal microflora
Host
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources Heterotroph

 

 

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