PROJECT INFORMATION
GOLD Project ID
Gp0007898  
Project Name
Xanthomonas hortorum pv. carotae M081  
Other Names
  
Legacy ER Project ID
17532  
Legacy GOLD ID
Gi07307  
NCBI BioProject Name Xanthomonas hortorum pv. carotae str. M081
NCBI BioProject ID 50443
NCBI BioProject Accession PRJNA50443
NCBI Locus Tag
XHC  
NCBI BioSample Accession SAMN02470773
PI
Added By Ionna Pagani on 2010-07-19
Last Modified By Alejandro Rodriguez Mojica on 2018-07-10
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Plant Pathogen
Agricultural
Sequencing Center Oregon State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Genomic prep of Xhc Important carrot pathogen  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Database
Database
  
Genome Publications Molecular plant pathology 12(6):580-94 Genome sequencing and comparative analysis of the carrot bacterial blight pathogen, Xanthomonas hortorum pv. carotae M081, for insights into pathogenicity and applications in molecular diagnostics.
Other Publications
  
PROJECT COMPOSITION
Study Xanthomonas hortorum pv. carotae M081
Organism Xanthomonas hortorum pv. carotae M081
Analysis Projects Xanthomonas hortorum pv. carotae M081
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007898
Organism Name
Xanthomonas hortorum pv. carotae M081  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Xanthomonas  
Genus Synonyms
  
Species
Xanthomonas hortorum  
Subspecies
  
Species Synonyms
  
Strain
M081  
Strain Synonyms
  
Serovar-Biovar
carotae  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 863365
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Xanthomonadales  
NCBI Family
Xanthomonadaceae  
NCBI Genus
Xanthomonas  
NCBI Species
Xanthomonas hortorum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Blight disease
Known Habitats Plants
Host
Plant root
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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