PROJECT INFORMATION
GOLD Project ID
Gp0007450  
Project Name
Clostridium tetani VI/1, ATCC 454  
Other Names
  
Legacy ER Project ID
16941  
Legacy GOLD ID
Gi10434  
NCBI BioProject Name Clostridium tetani ATCC 454
NCBI BioProject ID 158341
NCBI BioProject Accession PRJNA158341
NCBI Locus Tag
WS3  
NCBI BioSample Accession SAMN03579569
PI Howard Goldfine
Added By Athanasios Lykidis on 2010-04-01
Last Modified By Tatiparthi Reddy on 2012-10-16
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Animal Pathogen
Human Pathogen
Medical
Sequencing Center University of Pennsylvania (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
To obtain an incomplete genome sequence of an important human pathogen. Our work has established that the only published sequence is of a strain (E88) that is not wild type with respect to lipid composition, i.e. it lacks plasmalogens. The ATCC 454 strain has plasmalogens.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Clostridium tetani VI/1, ATCC 454
Organism Clostridium tetani VI/1, ATCC 454
Analysis Projects Clostridium tetani VI/1, ATCC 454
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
28  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007450
Organism Name
Clostridium tetani VI/1, ATCC 454  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium tetani  
Subspecies
  
Species Synonyms
  
Strain
VI/1, ATCC 454  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 454  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1172202
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium tetani  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Fecal  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 93818
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases Tetanus
Known Habitats Host
Terrestrial
Gastrointestinal tract
Feces
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph
Chemoorganotroph

 

 

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