PROJECT INFORMATION
GOLD Project ID
Gp0006540  
Project Name
Polaribacter sp. MED152  
Other Names
  
Legacy ER Project ID
11997  
Legacy GOLD ID
Gi00896, Gc0011997  
NCBI BioProject Name Polaribacter sp. MED152
NCBI BioProject ID 13543
NCBI BioProject Accession PRJNA13543
NCBI Locus Tag
MED  
NCBI BioSample Accession SAMN02603920
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Marine Microbial Initiative (MMI)
Environmental
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute Kalmar University (Sweden)
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
Nearly identical to bacteria dominant during diatom blooms in the Mediterranean and other marine environments, as detected by DGGE  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications 17215843
Other Publications
  
PROJECT COMPOSITION
Study Polaribacter sp. MED152
Organism Polaribacter sp. MED152
Analysis Projects Polaribacter sp. MED152
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
31  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0006540
Organism Name
Polaribacter sp. MED152  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Polaribacter  
Genus Synonyms
Tenacibaculum  
Species
Polaribacter sp. MED152  
Subspecies
  
Species Synonyms
  
Strain
MED152  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 313598
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Polaribacter  
NCBI Species
Polaribacter sp. MED152  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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