PROJECT INFORMATION
GOLD Project ID
Gp0006516  
Project Name
Citrobacter portucalensis 4_7_47CFAA  
Other Names
  
Legacy ER Project ID
16292  
Legacy GOLD ID
Gi05732  
NCBI BioProject Name Citrobacter freundii 4_7_47CFAA
NCBI BioProject ID 46379
NCBI BioProject Accession PRJNA46379
NCBI Locus Tag
HMPREF9428  
NCBI BioSample Accession SAMN02463852
PI Birren, B
Added By Konstantinos Liolios on 2009-12-10
Last Modified By Supratim Mukherjee on 2018-11-21
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Citrobacter portucalensis 4_7_47CFAA
Analysis Projects Citrobacter portucalensis 4_7_47CFAA
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
52  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006516
Organism Name
Citrobacter portucalensis 4_7_47CFAA  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Citrobacter  
Genus Synonyms
  
Species
Citrobacter portucalensis  
Subspecies
  
Species Synonyms
  
Strain
4_7_47CFAA  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
BEI HM-299  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1639133
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Citrobacter  
NCBI Species
Citrobacter portucalensis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Human intestinal microflora
Host
Human fecal
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9428  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
5. annotation (and sequence) submitted to NCBI  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
Sigmoid colon  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2010-03-29  
Date Sequencing Begins
2010-03-30  
Date Draft Sequencing Completed
2010-08-16  
Cross Reference ID
  

 

 

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