PROJECT INFORMATION
GOLD Project ID
Gp0005708  
Project Name
Labrenzia sp. DG1229  
Other Names
  
Legacy ER Project ID
484  
Legacy GOLD ID
Gi05372  
NCBI BioProject Name Labrenzia sp. DG1229
NCBI BioProject ID 40879
NCBI BioProject Accession PRJNA40879
NCBI Locus Tag
DG1229  
NCBI BioSample Accession SAMN02589594
PI David Green
Added By David Green on 2009-10-06
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Biogeochemical
Sequencing Center Scottish Association for Marine Science (United Kingdom)
Collaborating Institute
  
Funding Agency
  
Project Description
Labrenzia sp. DG1229 Whole genome sequencing project  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Labrenzia sp. DG1229
Organism Labrenzia sp. DG1229
Analysis Projects Labrenzia sp. DG1229
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
56  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005708
Organism Name
Labrenzia sp. DG1229  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Labrenzia  
Genus Synonyms
  
Species
Labrenzia sp. DG1229  
Subspecies
  
Species Synonyms
  
Strain
DG1229  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 681847
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Labrenzia  
NCBI Species
Labrenzia sp. DG1229  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab synthesis  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID DQ486476
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
20-30  
Salinity
Halotolerant  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
  
Symbiotic Relationship
Commensal  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Irregular colonies
Chains
Diseases
  
Known Habitats Marine
Host
Metabolisms DMSP degrader
Phenotypes
  
Energy Sources Chemoorganotroph
Chemolithotroph

 

 

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