PROJECT INFORMATION
GOLD Project ID
Gp0005686  
Project Name
Aliivibrio fischeri ES114 mutant 5  
Other Names
Vibrio fischeri ES114 mutant 5  
Legacy ER Project ID
16092  
Legacy GOLD ID
Gr00097  
NCBI BioProject Name Vibrio fischeri ES114
NCBI BioProject ID 337496
NCBI BioProject Accession PRJNA337496
NCBI Locus Tag
BE429  
NCBI BioSample Accession SAMN05518857
PI Stabb, Eric
Added By Nikos Kyrpides on 2009-10-31
Last Modified By Supratim Mukherjee on 2017-03-13
Project Comments
  
Project Status
incomplete  
Project Relevance Medical
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Resequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Identifying second-site suppressor mutations in Vibrio fischeri that restore aerobic growth in a mutant lacking the TCA cycle enzyme aconitase (AcnB)
Organism Aliivibrio fischeri ES114 mutant 5
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005686
Organism Name
Aliivibrio fischeri ES114 mutant 5  
Other names (alias, synonyms, short names, common names)
Vibrio fischeri ES114 mutant 5  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Aliivibrio  
Genus Synonyms
Vibrio  
Species
Aliivibrio fischeri  
Subspecies
  
Species Synonyms
  
Strain
ES114 mutant 5  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 700601  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 668
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Aliivibrio  
NCBI Species
Aliivibrio fischeri  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mollusca  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 118194
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
Euprymna scolopes  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Fresh water
Metabolisms
  
Phenotypes Non-Pathogen
Luminescent
Energy Sources Heterotroph

 

 

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