PROJECT INFORMATION
GOLD Project ID
Gp0048080  
Project Name
Clostridium autoethanogenum DSM 10061  
Other Names
  
Legacy ER Project ID
57377  
Legacy GOLD ID
Gi0057377, Gc0057377  
NCBI BioProject Name Clostridium autoethanogenum DSM 10061
NCBI BioProject ID 219420
NCBI BioProject Accession PRJNA219420
NCBI Locus Tag
CAETHG  
NCBI BioSample Accession SAMN02358571
PI
Added By JGI automated process on 2013-10-11
Last Modified By Supratim Mukherjee on 2017-10-18
Project Comments
  
Project Status
Complete and Published  
Project Relevance Industrial
Sequencing Center Oak Ridge National Laboratory (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX352885
Experiment Title DSM10061 454_PE Data
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 454
Library Layout PAIRED
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX835582
Experiment Title DSM10061_Ion_Torrent_Sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Ion_Torrent
Library Layout SINGLE
Library Instrument ION_TORRENT_PGM
 
SRA Experiment Id SRX835580
Experiment Title 454 shotgun SE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 454_SE
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX352902
Experiment Title Pacbio RS-|| Data
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Pacbio
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX352888
Experiment Title Illumina Data
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Illumina
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Clostridium autoethanogenum DSM 10061 Genome sequencing
Organism Clostridium autoethanogenum DSM 10061
Analysis Projects Clostridium autoethanogenum DSM 10061
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
31  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0048080
Organism Name
Clostridium autoethanogenum DSM 10061  
Other names (alias, synonyms, short names, common names)
Abrini  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium autoethanogenum  
Subspecies
  
Species Synonyms
  
Strain
DSM 10061  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 10061  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1341692
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium autoethanogenum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Unclassified  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?