PROJECT INFORMATION
GOLD Project ID
Gp0047071  
Project Name
Proteiniclasticum ruminis DSM 24773  
Other Names
  
Legacy ER Project ID
54515  
Legacy GOLD ID
Gi0054515  
NCBI BioProject Name Proteiniclasticum ruminis DSM 24773
NCBI BioProject ID 223441
NCBI BioProject Accession PRJNA223441
NCBI Locus Tag
T487  
NCBI BioSample Accession SAMN02841179
PI William Kelly
Added By JGI automated process on 2013-09-06
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1759130
Experiment Title Proteiniclasticum ruminis DSM 24773
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name OWOA
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.
Organism Proteiniclasticum ruminis DSM 24773
Analysis Projects Proteiniclasticum ruminis DSM 24773
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
43  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0047071
Organism Name
Proteiniclasticum ruminis DSM 24773  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Proteiniclasticum  
Genus Synonyms
  
Species
Proteiniclasticum ruminis  
Subspecies
  
Species Synonyms
  
Strain
DSM 24773  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 24773  
Type Strain
Yes  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1410668
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Proteiniclasticum  
NCBI Species
Proteiniclasticum ruminis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID DQ852338
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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