PROJECT INFORMATION
GOLD Project ID
Gp0044191  
Project Name
Thermodesulfobacterium commune DSM 2178  
Other Names
  
Legacy ER Project ID
51643  
Legacy GOLD ID
Gi0051643  
NCBI BioProject Name Thermodesulfobacterium commune DSM 2178
NCBI BioProject ID 239504
NCBI BioProject Accession PRJNA239504
NCBI Locus Tag
CC99  
NCBI BioSample Accession SAMN02744091
PI Nikos Kyrpides
Added By JGI automated process on 2013-07-26
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Thermodesulfobacterium commune YSRA-1
Analysis Projects Thermodesulfobacterium commune DSM 2178
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0002105
Organism Name
Thermodesulfobacterium commune YSRA-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
THERMODESULFOBACTERIA  
Genus
Thermodesulfobacterium  
Genus Synonyms
  
Species
Thermodesulfobacterium commune  
Subspecies
  
Species Synonyms
  
Strain
DSM 2178  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 2178  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.496  
Exemplar Name
Thermodesulfobacterium commune DSM 2178  
Taxon DOI
10.1601/tx.496  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 289377
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Thermodesulfobacteria  
NCBI Class
Thermodesulfobacteria  
NCBI Order
Thermodesulfobacteriales  
NCBI Family
Thermodesulfobacteriaceae  
NCBI Genus
Thermodesulfobacterium  
NCBI Species
Thermodesulfobacterium commune  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID L10662
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Thermophile  
Temperature Optimum
70  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Hot spring
Mud
Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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