PROJECT INFORMATION
GOLD Project ID
Gp0037462  
Project Name
Nocardiopsis synnemataformans DSM 44143  
Other Names
  
Legacy ER Project ID
43389  
Legacy GOLD ID
Gi0043389  
NCBI BioProject Name Nocardiopsis synnemataformans DSM 44143
NCBI BioProject ID 178005
NCBI BioProject Accession PRJNA178005
NCBI Locus Tag
D453  
NCBI BioSample Accession SAMN02472153
PI
Added By JGI automated process on 2013-04-02
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center Yunnan University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications 23626695
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Nocardiopsis synnemataformans DSM 44143 Genome sequencing
Organism Nocardiopsis synnemataformans DSM 44143
Analysis Projects Nocardiopsis synnemataformans DSM 44143
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
72  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0037462
Organism Name
Nocardiopsis synnemataformans DSM 44143  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Nocardiopsis  
Genus Synonyms
  
Species
Nocardiopsis synnemataformans  
Subspecies
  
Species Synonyms
  
Strain
DSM 44143  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 44143  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7550  
Exemplar Name
Nocardiopsis synnemataformans  
Taxon DOI
10.1601/tx.7550  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1245476
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Streptosporangiales  
NCBI Family
Nocardiopsaceae  
NCBI Genus
Nocardiopsis  
NCBI Species
Nocardiopsis synnemataformans  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Respiratory system  
Ecosystem Subtype
Pulmonary system  
Specific Ecosystem
Sputum  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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