PROJECT INFORMATION
GOLD Project ID
Gp0036828  
Project Name
Nocardiopsis alkaliphila YIM 80379  
Other Names
  
Legacy ER Project ID
42263  
Legacy GOLD ID
Gpto33827, Gi0042263  
NCBI BioProject Name Nocardiopsis alkaliphila YIM 80379
NCBI BioProject ID 178052
NCBI BioProject Accession PRJNA178052
NCBI Locus Tag
D472  
NCBI BioSample Accession SAMN02472156
PI Wen-Jun Li
Added By JGI automated process on 2013-03-06
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center Yunnan University (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Genetic mechanisms of environmental adaptability. Nocardiopsis alkaliphila is a alkaliphilic actinomycete isolated from desert soil in Egypt.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications 23626695

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Nocardiopsis alkaliphila YIM 80379
Organism Nocardiopsis alkaliphila YIM 80379
Analysis Projects Nocardiopsis alkaliphila YIM 80379
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0036828
Organism Name
Nocardiopsis alkaliphila YIM 80379  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Nocardiopsis  
Genus Synonyms
  
Species
Nocardiopsis alkaliphila  
Subspecies
  
Species Synonyms
  
Strain
DSM 44657  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 44657  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7535  
Exemplar Name
Nocardiopsis alkaliphila  
Taxon DOI
10.1601/tx.7535  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1246461
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Streptosporangiales  
NCBI Family
Nocardiopsaceae  
NCBI Genus
Nocardiopsis  
NCBI Species
Nocardiopsis alkaliphila  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Desert  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Desert soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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