PROJECT INFORMATION
GOLD Project ID
Gp0036465  
Project Name
Salipiger mucosus DSM 16094  
Other Names
  
Legacy ER Project ID
42373  
Legacy GOLD ID
Gi0042373  
NCBI BioProject Name Salipiger mucosus DSM 16094
NCBI BioProject ID 188761
NCBI BioProject Accession PRJNA188761
NCBI Locus Tag
SALMUC  
NCBI BioSample Accession SAMN02469746
PI Hans-Peter Klenk
Added By Hans-Peter Klenk on 2013-03-12
Last Modified By Nikos Kyrpides on 2015-05-13
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
Sequencing Center LGC Genomics (Germany)
Helmholtz Centre for Infection Research (Germany)
Collaborating Institute
  
Funding Agency German Research Foundation (DFG) (Germany)
Project Description
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 9(3):1331-43 Genome sequence of the exopolysaccharide-producing Salipiger mucosus type strain (DSM 16094(T)), a moderately halophilic member of the Roseobacter clade.
Other Publications
  
PROJECT COMPOSITION
Study Ecology, Physiology and Molecular Biology of the Roseobacter clade: Towards a Systems Biology Understanding of a Globally Important Clade of Marine Bacteria
Organism Salipiger mucosus DSM 16094
Analysis Projects Salipiger mucosus DSM 16094
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina MiSeq
Library Method (MIGS-28)
Illumina PE, 454 PE (3kB)  
Number Of Reads
14800324  
Read Size
  
Vector
  
GC Percent
67  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0036465
Organism Name
Salipiger mucosus DSM 16094  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Salipiger  
Genus Synonyms
  
Species
Salipiger mucosus  
Subspecies
  
Species Synonyms
  
Strain
A3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 16094  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8833  
Exemplar Name
Salipiger mucosus  
Taxon DOI
10.1601/tx.8833  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
No  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123237
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Salipiger  
NCBI Species
Salipiger mucosus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 381533
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
Halophile  
pH
6.0 - 10.0  
Cell Diameter
0.75-2.5 micrometers  
Cell Length
0.75-2.5 micrometers  
Color
Cream  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Saline soil
Metabolisms Acetate oxidizer
Phenotypes Saline
Catalase positive
Energy Sources Chemoheterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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