PROJECT INFORMATION
GOLD Project ID
Gp0035730  
Project Name
Natrinema pellirubrum 157  
Other Names
  
Legacy ER Project ID
41114  
Legacy GOLD ID
Gi39311  
NCBI BioProject Name Natrinema pellirubrum DSM 15624
NCBI BioProject ID 174937
NCBI BioProject Accession PRJNA174937
NCBI Locus Tag
C488  
NCBI BioSample Accession SAMN02471626
PI
Added By JGI automated process on 2013-02-26
Last Modified By Hema Katta on 2019-01-09
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of California, Davis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Haloarchaeal genomes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PLoS genetics 10(11):e1004784 Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response.
Other Publications
  
PROJECT COMPOSITION
Study Natrinema pellirubrum DSM 15624
Organism Natrinema pellirubrum 157
Analysis Projects Natrinema pellirubrum 157
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006804
Organism Name
Natrinema pellirubrum 157  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-HALOBACTERIA  
Genus
Natrinema  
Genus Synonyms
  
Species
Natrinema pellirubrum  
Subspecies
  
Species Synonyms
  
Strain
157  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 15624  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.341  
Exemplar Name
Natrinema pellirubrum  
Taxon DOI
10.1601/tx.341  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 797303
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Halobacteria  
NCBI Order
Natrialbales  
NCBI Family
Natrialbaceae  
NCBI Genus
Natrinema  
NCBI Species
Natrinema pellirubrum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fish  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ002947
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
Halophile  
pH
7.2 - 7.8  
Cell Diameter
0.7 - 1.0 um  
Cell Length
1.5 - 6 um  
Color
Orange  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Irregular colonies
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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