PROJECT INFORMATION | |
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GOLD Project ID
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Gp0003541
|
Project Name
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Eubacterium ramulus VPI C6-27, ATCC 29099
|
Other Names
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Legacy ER Project ID
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13320
|
Legacy GOLD ID
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Gi02740
|
NCBI BioProject Name | Eubacterium ramulus ATCC 29099 |
NCBI BioProject ID
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181041 |
NCBI BioProject Accession
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PRJNA181041 |
NCBI Locus Tag
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HMPREF0373
|
NCBI BioSample Accession
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SAMN02436882 |
PI | Fulton L |
Added By |
Heather Creasy
on 2007-12-30 |
Last Modified By |
Supratim Mukherjee
on 2017-03-29 |
Project Comments |
|
Project Status
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Permanent Draft
|
Project Relevance
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Human Microbiome Project (HMP) Medical |
Sequencing Center
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Washington University in St. Louis
(USA)
|
Collaborating Institute
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|
Funding Agency
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NIH
(USA)
|
Project Description
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Human Microbiome Project (HMP) Reference Genomes
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
Project Information
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|
Database
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Genome Publications
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Other Publications
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|
PROJECT COMPOSITION | |
Study |
Human Microbiome Project (HMP) Reference Genomes |
Organism |
Eubacterium ramulus VPI C6-27, ATCC 29099 |
Analysis Projects |
Eubacterium ramulus VPI C6-27, ATCC 29099 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
|
Finishing Goal
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Level 2: High-Quality Draft |
Sequencing Comments
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Sequencing Technology
(MIGS-29)
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Illumina |
Library Method
(MIGS-28)
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Number Of Reads
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|
Read Size
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|
Vector
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|
GC Percent |
43
|
Chromosome Count |
|
Plasmid Count |
|
ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0003541 |
Organism Name |
Eubacterium ramulus VPI C6-27, ATCC 29099
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
FIRMICUTES
|
Genus |
Eubacterium
|
Genus Synonyms |
|
Species |
Eubacterium ramulus
|
Subspecies |
|
Species Synonyms |
|
Strain |
VPI C6-27, ATCC 29099
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
DSM 3995
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.4265
|
Exemplar Name |
Eubacterium ramulus
|
Taxon DOI |
10.1601/tx.4265
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
1256908 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Firmicutes
|
NCBI Class |
Clostridia
|
NCBI Order |
Clostridiales
|
NCBI Family |
Eubacteriaceae
|
NCBI Genus |
Eubacterium
|
NCBI Species |
Eubacterium ramulus
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Human
|
Ecosystem Type |
Digestive system
|
Ecosystem Subtype |
Large intestine
|
Specific Ecosystem |
Fecal
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
L34623 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
|
Cell Shape |
Rod-shaped
|
Motility |
|
Sporulation |
|
Temperature Range |
Mesophile
|
Temperature Optimum |
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram+
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
|
Known Habitats |
Host Gastrointestinal tract Feces |
Metabolisms |
|
Phenotypes |
|
Energy Sources |
|
HMP METADATA | |
---|---|
HMP ID |
373
|
Show in DACC? |
Yes
|
HMP Project Status |
In Progress
|
BEI Status |
|
NCBI Submission Status |
2. project has NCBI project id
|
Isolate Suggestion Source |
|
HMP Isolation Body Sample Site |
Gastrointestinal tract
|
HMP Isolation Body Sample Subsite |
|
HMP Finishing Goal |
|
Source, Sample & Medical Relevance Comments |
|
Isolate Availability Comments |
|
Project Comments |
|
DNA Received |
Yes
|
Date DNA Received |
2012-03-12
|
Date Sequencing Begins |
|
Date Draft Sequencing Completed |
|
Cross Reference ID |
|
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