PROJECT INFORMATION
GOLD Project ID
Gp0003503  
Project Name
Edwardsiella tarda ATCC 23685  
Other Names
  
Legacy ER Project ID
13303  
Legacy GOLD ID
Gi02723  
NCBI BioProject Name Edwardsiella tarda ATCC 23685
NCBI BioProject ID 28661
NCBI BioProject Accession PRJNA28661
NCBI Locus Tag
EDWATA  
NCBI BioSample Accession SAMN00000732
PI Human Gut Community Users
Added By Heather Creasy on 2007-12-30
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Human Gut Microbiome Initiative (HGMI)
Fish Pathogen
Animal Pathogen
Human Pathogen
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX001436
Experiment Title 454 sequencing of Edwardsiella tarda ATCC 23685 genomic fragment library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 2317223734
Library Layout SINGLE
Library Instrument 454 GS FLX
 
SRA Experiment Id SRX001437
Experiment Title 454 sequencing of Edwardsiella tarda ATCC 23685 genomic fragment library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 2317223735
Library Layout SINGLE
Library Instrument 454 GS FLX
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Edwardsiella tarda ATCC 23685
Analysis Projects Edwardsiella tarda ATCC 23685
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
57  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003503
Organism Name
Edwardsiella tarda ATCC 23685  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Edwardsiella  
Genus Synonyms
  
Species
Edwardsiella tarda  
Subspecies
  
Species Synonyms
  
Strain
ATCC 23685  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 23685  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 500638
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Hafniaceae  
NCBI Genus
Edwardsiella  
NCBI Species
Edwardsiella tarda  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Gastroenteritis
Wound infection
Septicemia
Known Habitats Human intestinal microflora
Host
Gastrointestinal tract
Feces
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph
HMP METADATA
HMP ID
334  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Yes  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-01-26  
Date Sequencing Begins
2008-02-26  
Date Draft Sequencing Completed
2008-05-27  
Cross Reference ID
  

 

 

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