PROJECT INFORMATION
GOLD Project ID
Gp0325144  
Project Name
Actinomadura rupiterrae DSM 45251  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Actinomadura rupiterrae DSM 45251
NCBI BioProject ID 546933
NCBI BioProject Accession PRJNA546933
NCBI Locus Tag
FHU30  
NCBI BioSample Accession SAMN12025773
PI Hans-Peter Klenk
Added By JGI automated process on 2018-08-15
Last Modified By JGI automated process on 2019-06-17
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing of Actinobacteria genome as a plant growth promoter and producer of natural products and energy relevant enzymes  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Sequencing the genomes of 1000 actinobacteria strains
Organism Actinomadura rupiterrae DSM 45251
Analysis Projects Actinomadura rupiterrae DSM 45251
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio Sequel
PacBio RS II
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Tubes; PacBio Multiplexed 10kb, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0030202
Organism Name
Actinomadura rupiterrae DSM 45251  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Actinomadura  
Genus Synonyms
  
Species
Actinomadura rupiterrae  
Subspecies
  
Species Synonyms
  
Strain
DSM 45251  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 45251  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.22965  
Exemplar Name
Actinomadura rupiterrae  
Taxon DOI
10.1601/tx.22965  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 559627
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Streptosporangiales  
NCBI Family
Thermomonosporaceae  
NCBI Genus
Actinomadura  
NCBI Species
Actinomadura rupiterrae  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID FM210337
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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