PROJECT INFORMATION
GOLD Project ID
Gp0323236  
Project Name
Hymenobacter lapidarius CCM 8643  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Hymenobacter lapidarius CCM 8643 genome sequencing
NCBI BioProject ID 335954
NCBI BioProject Accession PRJNA335954
NCBI Locus Tag
BEN47  
NCBI BioSample Accession SAMN05468008
PI
Added By JGI automated process on 2018-07-12
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Masaryk University
Collaborating Institute
  
Funding Agency
  
Project Description
Hymenobacter lapidarius CCM 8643 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications International journal of systematic and evolutionary microbiology 67(6):1975-1983 Red-pink pigmented Hymenobacter coccineus sp. nov., Hymenobacter lapidarius sp. nov. and Hymenobacter glacialis sp. nov., isolated from rocks in Antarctica.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Hymenobacter genome sequencing
Organism Hymenobacter lapidarius CCM 8643
Analysis Projects Hymenobacter lapidarius CCM 8643
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Ion Torrent PGM
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0454910
Organism Name
Hymenobacter lapidarius CCM 8643  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Hymenobacter  
Genus Synonyms
  
Species
Hymenobacter lapidarius  
Subspecies
  
Species Synonyms
  
Strain
CCM 8643  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
10.1601/ex.30235  
Exemplar Name
Hymenobacter lapidarius  
Taxon DOI
10.1601/tx.30235  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1908237
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Cytophagia  
NCBI Order
Cytophagales  
NCBI Family
Hymenobacteraceae  
NCBI Genus
Hymenobacter  
NCBI Species
Hymenobacter lapidarius  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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