PROJECT INFORMATION
GOLD Project ID
Gp0316929  
Project Name
Clostridium botulinum CFSAN064329  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Clostridium botulinum CFSAN064329 genome sequencing
NCBI BioProject ID 290487
NCBI BioProject Accession PRJNA290487
NCBI Locus Tag
DBN47  
NCBI BioSample Accession SAMN07135561
PI
Added By JGI automated process on 2018-05-24
Last Modified By Hema Katta on 2018-11-01
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center US Food and Drug Administration
Collaborating Institute
  
Funding Agency
  
Project Description
Whole genome sequencing of cultured Clostridium botulinum as part of the US Food and Drug Administration's WGS surveillance effort for the rapid detection of foodborne illness outbreaks.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Closed Genome Sequence of Clostridium botulinum Strain CFSAN064329 (62A).

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5169881
Experiment Title Whole genome PacBio Sequel sequence of Clostridium botulinum
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SMRTbell library SEQ000084969
Library Layout SINGLE
PROJECT COMPOSITION
Study Clostridium botulinum CFSAN064329 genome sequencing
Organism Clostridium botulinum CFSAN064329
Analysis Projects Clostridium botulinum CFSAN064329
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0452508
Organism Name
Clostridium botulinum CFSAN064329  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium botulinum  
Subspecies
  
Species Synonyms
  
Strain
CFSAN064329  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1491
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium botulinum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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