PROJECT INFORMATION
GOLD Project ID
Gp0290290  
Project Name
Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Cv_40hr_BR1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Cv_40hr_BR1
NCBI BioProject ID 439626
NCBI BioProject Accession PRJNA439626
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08769776
PI Ashley Shade
Added By JGI automated process on 2017-12-21
Last Modified By JGI automated process on 2019-06-18
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Pseudomonas syringae DC3000 transcriptome; Cells grown in M9-Glucose medium at a pH of 7.4 and temperature of 27 C, in the proximity of Chromobacterium violaceum ATCC 315322 for 40 hours  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3984052
Experiment Title Pseudomonas syringae DC3000 transcriptomics
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection other
Library Name BYSXP
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study System-level temporal dynamics of microbial interactions in a synthetic bacterial community
Organism Pseudomonas syringae DC3000
Analysis Projects Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Cv_40hr_BR1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0221737
Organism Name
Pseudomonas syringae DC3000  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas syringae  
Subspecies
  
Species Synonyms
  
Strain
DC3000  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 317
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas syringae  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 493307
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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