| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0290265
|
|
Project Name
|
Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Bt_35hr_BR4
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Bt_35hr_BR4 |
|
NCBI BioProject ID
|
439601 |
|
NCBI BioProject Accession
|
PRJNA439601 |
|
NCBI Locus Tag
|
|
|
NCBI BioSample Accession
|
SAMN08769625 |
| PI | Ashley Shade |
| Added By |
JGI automated process
on 2017-12-21 |
| Last Modified By |
JGI automated process
on 2018-10-01 |
| Project Comments |
|
|
Project Status
|
incomplete
|
|
Project Relevance
|
|
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Pseudomonas syringae DC3000 transcriptome; Cells grown in M9-Glucose medium at a pH of 7.4 and temperature of 27 C, in the proximity of Burkholderia thailandensis E264 for 35 hours
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
RNA |
|
Sequencing Strategy
|
Transcriptome
|
| EXTERNAL PROJECT LINKS | |
| JGI Portal Download | Raw Sequence Data |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
System-level temporal dynamics of microbial interactions in a synthetic bacterial community |
| Organism |
Pseudomonas syringae DC3000 |
| Analysis Projects |
Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Bt_35hr_BR4 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2500-1TB |
|
Library Method
(MIGS-28)
|
Illumina Low Input RNASeq w/rRNA Depletion, Plates
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
59
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0221737 |
| Organism Name |
Pseudomonas syringae DC3000
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Pseudomonas
|
| Genus Synonyms |
|
| Species |
Pseudomonas syringae
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
DC3000
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
317 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Pseudomonadales
|
| NCBI Family |
Pseudomonadaceae
|
| NCBI Genus |
Pseudomonas
|
| NCBI Species |
Pseudomonas syringae
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
|
| Ecosystem Category |
|
| Ecosystem Type |
|
| Ecosystem Subtype |
|
| Specific Ecosystem |
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
493307 |
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
