Studies
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47,492 |
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Biosamples
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121,670 |
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Sequencing Projects
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389,193 |
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Analysis Projects
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310,436 |
| Organisms | 403,423 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0290265
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Project Name
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Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Bt_35hr_BR4
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Bt_35hr_BR4 | ||||||||||||||||||
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NCBI BioProject ID
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439601 |
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NCBI BioProject Accession
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PRJNA439601 |
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NCBI Locus Tag
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NCBI BioSample Accession
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SAMN08769625 |
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| PI | Ashley Shade | ||||||||||||||||||
| Added By |
JGI automated process
on 2017-12-21 |
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| Last Modified By |
JGI automated process
on 2019-06-18 |
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| Project Comments |
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Project Status
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incomplete
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Pseudomonas syringae DC3000 transcriptome; Cells grown in M9-Glucose medium at a pH of 7.4 and temperature of 27 C, in the proximity of Burkholderia thailandensis E264 for 35 hours
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| Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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RNA |
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Sequencing Strategy
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Transcriptome
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
System-level temporal dynamics of microbial interactions in a synthetic bacterial community |
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| Organism |
Pseudomonas syringae DC3000 |
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| Analysis Projects |
Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Bt_35hr_BR4 |
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| Number of Analysis Projects (AP) |
1
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500-1TB |
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Library Method
(MIGS-28)
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Illumina Low Input RNASeq w/rRNA Depletion, Plates
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
59
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0221737 |
| Organism Name |
Pseudomonas syringae DC3000
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-GAMMA
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| Genus |
Pseudomonas
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| Genus Synonyms |
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| Species |
Pseudomonas syringae
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| Subspecies |
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| Species Synonyms |
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| Strain |
DC3000
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
317 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Gammaproteobacteria
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| NCBI Order |
Pseudomonadales
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| NCBI Family |
Pseudomonadaceae
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| NCBI Genus |
Pseudomonas
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| NCBI Species |
Pseudomonas syringae
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
493307 |
| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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