PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0290265
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Project Name
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Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Bt_35hr_BR4
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Bt_35hr_BR4 | ||||||||||||||||||
NCBI BioProject ID
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439601 |
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NCBI BioProject Accession
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PRJNA439601 |
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NCBI Locus Tag
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NCBI BioSample Accession
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SAMN08769625 |
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PI | Ashley Shade | ||||||||||||||||||
Added By |
JGI automated process
on 2017-12-21 |
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Last Modified By |
JGI automated process
on 2019-06-18 |
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Project Comments |
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Project Status
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incomplete
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Pseudomonas syringae DC3000 transcriptome; Cells grown in M9-Glucose medium at a pH of 7.4 and temperature of 27 C, in the proximity of Burkholderia thailandensis E264 for 35 hours
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Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||
Specimen
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Organism |
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Nucleic Acid
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RNA |
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Sequencing Strategy
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Transcriptome
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EXTERNAL PROJECT LINKS | |||||||||||||||||||
JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
Project Information
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Database
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Genome Publications
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Other Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||
Study |
System-level temporal dynamics of microbial interactions in a synthetic bacterial community |
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Organism |
Pseudomonas syringae DC3000 |
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Analysis Projects |
Pseudomonas syringae DC3000 transcriptome - 2mem_Ps_Bt_35hr_BR4 |
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Number of Analysis Projects (AP) |
1
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500-1TB |
Library Method
(MIGS-28)
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Illumina Low Input RNASeq w/rRNA Depletion, Plates
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
59
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0221737 |
Organism Name |
Pseudomonas syringae DC3000
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
PROTEOBACTERIA-GAMMA
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Genus |
Pseudomonas
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Genus Synonyms |
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Species |
Pseudomonas syringae
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Subspecies |
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Species Synonyms |
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Strain |
DC3000
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
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Type Strain |
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Exemplar DOI |
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Exemplar Name |
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Taxon DOI |
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
317 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Proteobacteria
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NCBI Class |
Gammaproteobacteria
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NCBI Order |
Pseudomonadales
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NCBI Family |
Pseudomonadaceae
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NCBI Genus |
Pseudomonas
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NCBI Species |
Pseudomonas syringae
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ISOLATION CLASSIFICATION | |
Ecosystem |
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Ecosystem Category |
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Ecosystem Type |
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Ecosystem Subtype |
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Specific Ecosystem |
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
493307 |
Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
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Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
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Metabolisms |
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Phenotypes |
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Energy Sources |
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