PROJECT INFORMATION
GOLD Project ID
Gp0002833  
Project Name
Niabella soli JS13-8, DSM 19437  
Other Names
  
Legacy ER Project ID
15209  
Legacy GOLD ID
Gc0015209  
NCBI BioProject Name Niabella soli DSM 19437
NCBI BioProject ID 61269
NCBI BioProject Accession PRJNA61269
NCBI Locus Tag
Niaso  
NCBI BioSample Accession SAMN02261390
PI Jonathan Eisen
Added By Nikos Kyrpides on 2009-08-08
Last Modified By Jyothi Mallajosyula on 2014-06-24
Project Comments
  
Project Status
Complete and Published  
Project Relevance Tree of Life
GEBA
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
Niabella soli DSM 19437 Genome sequencing  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications 23408178
Other Publications
  
PROJECT COMPOSITION
Study A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Organism Niabella soli JS13-8, DSM 19437
Analysis Projects Niabella soli JS13-8, DSM 19437
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0002833
Organism Name
Niabella soli JS13-8, DSM 19437  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Niabella  
Genus Synonyms
  
Species
Niabella soli  
Subspecies
  
Species Synonyms
  
Strain
JS13-8  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 19437  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.14055  
Exemplar Name
Niabella soli  
Taxon DOI
10.1601/tx.14055  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 929713
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Chitinophagia  
NCBI Order
Chitinophagales  
NCBI Family
Chitinophagaceae  
NCBI Genus
Niabella  
NCBI Species
Niabella soli  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID EF592608
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37C  
Salinity
  
pH
6 - 7  
Cell Diameter
0.5 - 0.7 um  
Cell Length
0.8 - 1;4 um  
Color
Yellow  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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