PROJECT INFORMATION
GOLD Project ID
Gp0000266  
Project Name
Selenomonas artemidis F0399  
Other Names
  
Legacy ER Project ID
16895  
Legacy GOLD ID
Gi06436  
NCBI BioProject Name Selenomonas artemidis F0399
NCBI BioProject ID 47277
NCBI BioProject Accession PRJNA47277
NCBI Locus Tag
HMPREF9555  
NCBI BioSample Accession SAMN00189154
PI Fulton L
Added By Konstantinos Liolios on 2010-03-26
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for Human Microbiome Project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX037002
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 2857600730
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Spot Length 206
 
SRA Experiment Id SRX036931
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 2857600730
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Selenomonas artemidis F0399
Analysis Projects Selenomonas artemidis F0399
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
57  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000266
Organism Name
Selenomonas artemidis F0399  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Selenomonas  
Genus Synonyms
  
Species
Selenomonas artemidis  
Subspecies
  
Species Synonyms
  
Strain
F0399  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
BEI HM-326  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 749551
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Selenomonadales  
NCBI Family
Selenomonadaceae  
NCBI Genus
Selenomonas  
NCBI Species
Selenomonas artemidis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Crescent-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Human oral cavity
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9555  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2010-02-18  
Date Sequencing Begins
2010-06-04  
Date Draft Sequencing Completed
2010-08-10  
Cross Reference ID
HOMD: tax_136  

 

 

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