PROJECT INFORMATION
GOLD Project ID
Gp0261151  
Project Name
Thermococcus sp. 5-4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genome sequencing of Thermococcus sp. 5-4
NCBI BioProject ID 389376
NCBI BioProject Accession PRJNA389376
NCBI Locus Tag
CDI07  
NCBI BioSample Accession SAMN07196561
PI
Added By JGI automated process on 2017-11-09
Last Modified By JGI automated process on 2017-11-10
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center CEA Genoscope (France)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Thermococcus sp. 5-4  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PLoS genetics 13(6):e1006847 Flipping chromosomes in deep-sea archaea.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome sequencing of Thermococcus sp. 5-4
Organism Thermococcus sp. 5-4
Analysis Projects Thermococcus sp. 5-4
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0396705
Organism Name
Thermococcus sp. 5-4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-THERMOCOCCI  
Genus
Thermococcus  
Genus Synonyms
  
Species
Thermococcus sp. 5-4  
Subspecies
  
Species Synonyms
  
Strain
5-4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
JCM 31817  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2008440
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Thermococci  
NCBI Order
Thermococcales  
NCBI Family
Thermococcaceae  
NCBI Genus
Thermococcus  
NCBI Species
Thermococcus sp. 5-4  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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