PROJECT INFORMATION
GOLD Project ID
Gp0025697  
Project Name
Bacteroidetes bacterium JGI 0000113-A17  
Other Names
  
Legacy ER Project ID
29373  
Legacy GOLD ID
Gi21337  
NCBI BioProject Name Bacteroidetes bacterium JGI 0000113-A17
NCBI BioProject ID 177742
NCBI BioProject Accession PRJNA177742
NCBI Locus Tag
D336  
NCBI BioSample Accession SAMN02746021
PI Steven Hallam
Added By JGI automated process on 2012-09-25
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Microbial Systems Ecology of Expanding Oxygen-Minimum Zones (OMZs) in the Northeast subarctic Pacific Ocean (NESAP). This project investigates microbial gene expression in the OMZ of the NESAP. Comparative metagenomics and transcriptomics approaches will identify molecular indicators for microbial community responses to changing levels of water-column oxygen-deficiency, with samples from locations representing seasonally anoxic, coastal, transition and open-ocean OMZs. The multi-molecular data sets will facilitate identification of environmental and genetic factors regulating systems metabolism and biogeochemical cycling within the oxygen-deficient water column. These ecological indicator genes will aid development of probe sets for in situ monitoring devices, and provide a database for comparative community genomic studies.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Microbial Systems Ecology of Expanding Oxygen Minimum Zones in the Eastern Subtropical North Pacific Ocean
Organism Bacteroidetes bacterium JGI 0000113-A17
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
34  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0025697
Organism Name
Bacteroidetes bacterium JGI 0000113-A17  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
  
Genus Synonyms
  
Species
Bacteroidetes bacterium JGI 0000113-A17  
Subspecies
  
Species Synonyms
  
Strain
JGI 0000113-A17  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1245604
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
  
NCBI Order
  
NCBI Family
  
NCBI Genus
  
NCBI Species
Bacteroidetes bacterium JGI 0000113-A17  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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