PROJECT INFORMATION
GOLD Project ID
Gp0249154  
Project Name
Clostridium carboxidivorans P7 transcriptomics - 3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Clostridium carboxidivorans P7 transcriptomics - 3
NCBI BioProject ID 440439
NCBI BioProject Accession PRJNA440439
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08776178
PI Adam Guss
Added By JGI automated process on 2017-09-29
Last Modified By JGI automated process on 2018-10-01
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Clostridium carboxidivorans P7 transcriptomics - growth conditions: RCM media + 5g/L lactate - pH 7.0 - anaerobic - 37C  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Genome and transcriptome sequencing of evolved Clostridium thermocellum mutants and other biofuel strains
Organism Clostridium carboxidivorans P7
Analysis Projects Clostridium carboxidivorans P7 transcriptomics - 3
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
30  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005078
Organism Name
Clostridium carboxidivorans P7  
Other names (alias, synonyms, short names, common names)
Clostridium carboxidivorans DSM 15243  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium carboxidivorans  
Subspecies
  
Species Synonyms
  
Strain
P7  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 15243  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9596  
Exemplar Name
Clostridium carboxidivorans  
Taxon DOI
10.1601/tx.9596  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 536227
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium carboxidivorans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Industrial wastewater  
Ecosystem Subtype
Agricultural wastewater  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY170379
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
37 - 40  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases None
Known Habitats Aquatic
Metabolisms Solvent producer
Acetogenic
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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