PROJECT INFORMATION
GOLD Project ID
Gp0023651  
Project Name
Actinomadura chibensis NBRC 106107  
Other Names
  
Legacy ER Project ID
28918  
Legacy GOLD ID
Gi20878  
NCBI BioProject Name Actinomadura chibensis NBRC 106107
NCBI BioProject ID 172571
NCBI BioProject Accession PRJDB372
NCBI Locus Tag
ACH01S  
NCBI BioSample Accession SAMD00046498
PI
Added By JGI automated process on 2012-08-29
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Comparative genomics of Actinomadura isolates  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Actinomadura chibensis NBRC 106107
Organism Actinomadura chibensis NBRC 106107
Analysis Projects Actinomadura chibensis NBRC 106107
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0023651
Organism Name
Actinomadura chibensis NBRC 106107  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Actinomadura  
Genus Synonyms
  
Species
Actinomadura chibensis  
Subspecies
  
Species Synonyms
  
Strain
IFM 10266  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
NBRC 106107  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13192  
Exemplar Name
Actinomadura chibensis  
Taxon DOI
10.1601/tx.13192  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1220554
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Streptosporangiales  
NCBI Family
Thermomonosporaceae  
NCBI Genus
Actinomadura  
NCBI Species
Actinomadura chibensis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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