PROJECT INFORMATION
GOLD Project ID
Gp0023442  
Project Name
Escherichia coli O157:H- 493-89  
Other Names
  
Legacy ER Project ID
27905  
Legacy GOLD ID
Gi19919  
NCBI BioProject Name Escherichia coli O157:H- str. 493-89
NCBI BioProject ID 72247
NCBI BioProject Accession PRJNA72247
NCBI Locus Tag
KEQ  
NCBI BioSample Accession SAMN02952921
PI
Added By JGI automated process on 2012-07-30
Last Modified By JGI automated process on 2014-10-31
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center U.S. Food and Drug Administration (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Surveillance studies of clinical isolates report that many non-O157 STEC represent a great public health risk. Sequencing at least one or more genomes a clinical case from each non-O157 STEC serotype will be beneficial in characterizing signatures differentiating these strains.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Non-O157 Shiga toxin-producing Escherichia coli in foods- FDA
Organism Escherichia coli O157:H- 493-89
Analysis Projects Escherichia coli O157:H- 493-89
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
50  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0009842
Organism Name
Escherichia coli O157:H- 493-89  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Escherichia  
Genus Synonyms
  
Species
Escherichia coli  
Subspecies
  
Species Synonyms
  
Strain
493-89  
Strain Synonyms
  
Serovar/Cultivar
O157:H-  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 926027
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Escherichia  
NCBI Species
Escherichia coli  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases Diarrhea
Hemorrhagic colitis
Known Habitats Human intestinal microflora
Host
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?