PROJECT INFORMATION
GOLD Project ID
Gp0222696  
Project Name
Paludisphaera borealis PX4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genome sequencing of Paludisphaera borealis PX4
NCBI BioProject ID 354242
NCBI BioProject Accession PRJNA354242
NCBI Locus Tag
BSF38  
NCBI BioSample Accession SAMN06044225
PI
Added By JGI automated process on 2017-07-13
Last Modified By JGI automated process on 2017-07-14
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Research Center of Biotechnology of RAS
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Paludisphaera borealis PX4  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Frontiers in microbiology Comparative Genomics of Four Isosphaeraceae Planctomycetes: A Common Pool of Plasmids and Glycoside Hydrolase Genes Shared by Paludisphaera borealis PX4(T), Isosphaera pallida IS1B(T), Singulisphaera acidiphila DSM 18658(T), and Strain SH-PL62.
Other Publications
  
PROJECT COMPOSITION
Study Paludisphaera borealis PX4 Genome sequencing
Organism Paludisphaera borealis PX4
Analysis Projects Paludisphaera borealis PX4
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0375478
Organism Name
Paludisphaera borealis PX4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PLANCTOMYCETES  
Genus
Paludisphaera  
Genus Synonyms
  
Species
Paludisphaera borealis  
Subspecies
  
Species Synonyms
  
Strain
PX4  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
10.1601/ex.28230  
Exemplar Name
Paludisphaera borealis  
Taxon DOI
10.1601/tx.28230  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1387353
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Planctomycetes  
NCBI Class
Planctomycetia  
NCBI Order
Planctomycetales  
NCBI Family
Isosphaeraceae  
NCBI Genus
Paludisphaera  
NCBI Species
Paludisphaera borealis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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