PROJECT INFORMATION
GOLD Project ID
Gp0021698  
Project Name
Xanthomonas axonopodis pv. manihotis AT6B  
Other Names
  
Legacy ER Project ID
25778  
Legacy GOLD ID
Gi17908  
NCBI BioProject Name Xanthomonas axonopodis pv. manihotis str. AT6B
NCBI BioProject ID 165201
NCBI BioProject Accession PRJNA165201
NCBI Locus Tag
A35G  
NCBI BioSample Accession SAMN01090302
PI
Added By JGI automated process on 2012-06-08
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of California, Berkeley (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Cassava Bacterial Blight strain sequencing.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 109(28):E1972-9 High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX159913
Experiment Title Whole genome analysis of Xanthomonas axonopodis pv. manihotis str. AT6B
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 7
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
PROJECT COMPOSITION
Study High-throughput genomic sequencing of cassava bacterial blight strainsĀ 
Organism Xanthomonas axonopodis pv. manihotis AT6B
Analysis Projects Xanthomonas axonopodis pv. manihotis AT6B
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0021698
Organism Name
Xanthomonas axonopodis pv. manihotis AT6B  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Xanthomonas  
Genus Synonyms
  
Species
Xanthomonas axonopodis  
Subspecies
  
Species Synonyms
  
Strain
AT6B  
Strain Synonyms
  
Serovar/Cultivar
pv. manihotis  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1189616
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Xanthomonadales  
NCBI Family
Xanthomonadaceae  
NCBI Genus
Xanthomonas  
NCBI Species
Xanthomonas phaseoli  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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