PROJECT INFORMATION
GOLD Project ID
Gp0021697  
Project Name
Xanthomonas axonopodis pv. manihotis AFNC1360  
Other Names
  
Legacy ER Project ID
25777  
Legacy GOLD ID
Gi17907  
NCBI BioProject Name Xanthomonas axonopodis pv. manihotis str. AFNC1360
NCBI BioProject ID 165205
NCBI BioProject Accession PRJNA165205
NCBI Locus Tag
A35K  
NCBI BioSample Accession SAMN01090301
PI
Added By JGI automated process on 2012-06-08
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of California, Berkeley (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Cassava Bacterial Blight strain sequencing.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 109(28):E1972-9 High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance.
Other Publications
  
PROJECT COMPOSITION
Study High-throughput genomic sequencing of cassava bacterial blight strainsĀ 
Organism Xanthomonas axonopodis pv. manihotis AFNC1360
Analysis Projects Xanthomonas axonopodis pv. manihotis AFNC1360
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0021697
Organism Name
Xanthomonas axonopodis pv. manihotis AFNC1360  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Xanthomonas  
Genus Synonyms
  
Species
Xanthomonas axonopodis  
Subspecies
  
Species Synonyms
  
Strain
AFNC1360  
Strain Synonyms
  
Serovar-Biovar
pv. manihotis  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1189618
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Xanthomonadales  
NCBI Family
Xanthomonadaceae  
NCBI Genus
Xanthomonas  
NCBI Species
Xanthomonas phaseoli  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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