PROJECT NAME
GOLD Project ID
Gp0021098  
Project Name
Fusobacterium nucleatum CTI-1  
Other Names
  
Legacy ER Project ID
24952  
Legacy GOLD ID
Gi17139  
NCBI BioProject Name Fusobacterium nucleatum CTI-1
NCBI BioProject ID 170356
NCBI BioProject Accession PRJNA170356
NCBI Locus Tag
HMPREF1538  
NCBI BioSample Accession SAMN02597026
PI Birren, B
Added By Ionna Pagani on 2012-05-09
Last Modified By JGI automated process on 2014-10-31
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Fusobacterium nucleatum CTI-1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
27  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0021098
Organism Name
Fusobacterium nucleatum CTI-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FUSOBACTERIA  
Genus
Fusobacterium  
Genus Synonyms
  
Species
Fusobacterium nucleatum  
Subspecies
  
Species Synonyms
  
Strain
CTI-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1204474
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Fusobacteria  
NCBI Class
Fusobacteriia  
NCBI Order
Fusobacteriales  
NCBI Family
Fusobacteriaceae  
NCBI Genus
Fusobacterium  
NCBI Species
Fusobacterium nucleatum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
1538  
Show in DACC?
Yes  
HMP Project Status
In Progress  
BEI Status
  
NCBI Submission Status
2. project has NCBI project id  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
Colon  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Alex Kostic & Wendy Garrett, Harvard School of Public Health  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2012-01-19  
Date Sequencing Begins
2012-12-04  
Date Draft Sequencing Completed
2013-03-03  
Cross Reference ID
  

 

 

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