PROJECT INFORMATION
GOLD Project ID
Gp0195506  
Project Name
Pyrococcus chitonophagus DSM 10152  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pyrococcus chitonophagus DSM 10152
NCBI BioProject ID 318679
NCBI BioProject Accession PRJEB12305
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA3721282
PI Constantinos Vorgias
Added By Supratim Mukherjee on 2017-01-13
Last Modified By Supratim Mukherjee on 2017-03-09
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center University of Athens
Collaborating Institute
  
Funding Agency
  
Project Description
Complete genome sequence of the archaeon Pyrococcus chitonophagus DSM 10152  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Extremophiles 20(3):351-61 Analysis of the complete genome sequence of the archaeon Pyrococcus chitonophagus DSM 10152 (formerly Thermococcus chitonophagus).
Other Publications
  
PROJECT COMPOSITION
Study Pyrococcus chitonophagus DSM 10152 genome sequencing
Organism Pyrococcus chitonophagus DSM 10152
Analysis Projects Pyrococcus chitonophagus DSM 10152
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
Nextera DNA Sample Preparation Kit  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0029043
Organism Name
Pyrococcus chitonophagus DSM 10152  
Other names (alias, synonyms, short names, common names)
Pyrococcus chitonophagus DSM 10152  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-THERMOCOCCI  
Genus
Pyrococcus  
Genus Synonyms
  
Species
Pyrococcus chitonophagus  
Subspecies
  
Species Synonyms
  
Strain
DSM 10152  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 10152  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.381  
Exemplar Name
Thermococcus chitonophagus DSM 10152  
Taxon DOI
10.1601/tx.381  
Biosafety Level
  
Organism Comments
P. chitonophagus was misclassified at the genus level and it has now been suggested to belong to the Pyrococcus rather than the Thermococcus genus. PMID:15006744  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2260
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Thermococci  
NCBI Order
Thermococcales  
NCBI Family
Thermococcaceae  
NCBI Genus
Pyrococcus  
NCBI Species
  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Hot spring
Aquatic
Hydrothermal vent
Metabolisms Chitin degradation
Phenotypes
  
Energy Sources
  

 

 

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