PROJECT INFORMATION
GOLD Project ID
Gp0018866  
Project Name
Lactobacillus casei W56  
Other Names
  
Legacy ER Project ID
40529  
Legacy GOLD ID
Gc02494  
NCBI BioProject Name Genome sequence of Lactobacillus casei W56
NCBI BioProject ID 178267
NCBI BioProject Accession PRJEB219
NCBI Locus Tag
BN194  
NCBI BioSample Accession SAMEA2271945
PI Michael Rothballer
Added By Tatiparthi Reddy on 2013-02-07
Last Modified By Alejandro Rodriguez Mojica on 2018-07-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Probiotic
Comparative analysis
Sequencing Center University of Vienna (Austria)
Collaborating Institute
  
Funding Agency
  
Project Description
We announce the draft genome of Lactobacillus casei W56 in one contig. This strain shows immune modulatory and probiotic properties. The strain is also an ingredient of commercially available probiotic products.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 194(23):6638 Draft genome sequence of Lactobacillus casei W56.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Lactobacillus casei W56
Organism Lactobacillus casei W56
Analysis Projects Lactobacillus casei W56
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
46  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0018866
Organism Name
Lactobacillus casei W56  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lactobacillus  
Genus Synonyms
  
Species
Lactobacillus casei  
Subspecies
  
Species Synonyms
  
Strain
W56  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1215914
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lactobacillus  
NCBI Species
Lactobacillus casei  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Intestinal tract
Host
Metabolisms
  
Phenotypes Probiotic
Energy Sources Heterotroph

 

 

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